Dear Chunlin Pan, please see the ATENA Science Example Manual, section 2.2 Tutorial for Construction Process for an example of construction Process in GiD. For ATENA 2D, please see the manual "Tutorial for Construction Process Modelling in ATENA 2D". For ATENA 3D, there is no example, but defining the constructio cases and their use in load steps is pretty straight forward.
There is no example demonstarting the use of the NLCem2Variable material, but you simply define the step history for the elastic modulus (and eventually other material parameters). Of course, don't set the elastic modulus to zero, as this would introduce severe numerical problems (e.g., division by zero). Use something like 1/100-1/1000 of the normal elastic modulus (i.e., of the one used later).